r - Building packages with Rcpp, Attributes not handled correctly -

-

i've been playing around setting r package aims make use of rcpp in rstudio, i'm struggling things work rcpp attributes.

my understanding of how works tenuous, understanding follows:

  1. in source c++ files, can add rcpp attributes, example tag // [[rcpp::export]] marks c++ function exporting, making available r.
  2. when build package, rcpp generates appropriate c++ code in file rcppexports.cpp, , wrapper functions in r source file rcppexports.r.

this doesn't seem working (as expect) when build package. roxygen isn't playing nicely when generating namespace file (so i've disabled that). tag // [[rcpp::export]] seems mark function exporting r, rather marking function being exported package namespace.

more importantly, rcpp attribute tag // [[rcpp::depends()]] isn't being handled correctly. if copy code here new source file, , rebuild package, gcc throws errors on rcppexports.cpp file saying bigmatrix identifier undeclared indicating attribute tage // [[rcpp::depends(bigmemory)]] isn't being handled correctly.

since multiple things aren't working expect, missing in understanding of rcpp attribute tags?

this issue rcppexports.cpp file generated. @ moment, there no way teach include header files somewhere else, not include bigmemory/matrixaccessor.hpp.

a workaround this: 

#include <rcpp.h> #include <bigmemory/matrixaccessor.hpp>  rcpp::numericvector bigcolsums(rcpp::xptr<bigmatrix> pbigmat) {      // create matrix accessor can @ elements of matrix.     matrixaccessor<double> ma(*pbigmat);      // create vector we'll store column sums in.     rcpp::numericvector colsums(pbigmat->ncol());     (size_t i=0; < pbigmat->ncol(); ++i)         colsums[i] = std::accumulate(ma[i], ma[i]+pbigmat->nrow(), 0.0);     return colsums; }  // [[rcpp::export]] rcpp::numericvector bigcolsums( sexp pbigmat ){     return  bigcolsums( rcpp::xptr<bigmatrix>( pbigmat) ) ;    }

so capture type in .cpp file , rcppexports.cpp has know sexp.


Comments

Post a Comment

Popular posts from this blog

java - activate/deactivate sonar maven plugin by profile? -

-
i use sonar plugin executes if activated in maven profile. sonar runs on every compile. the problem build fail other team members not have sonar application installed locally. pom.xml checked in team members same copy including sonar configuration, don't want them modify purpose of disabling sonar (they might inadvertently check modified copy in). please advise how configure maven (.m2/settings.xml) and/or pom.xml sonar feature can enabled/disabled local profile. here sonar configuration in each project's pom.xml: <plugin> <groupid>org.codehaus.mojo</groupid> <artifactid>sonar-maven-plugin</artifactid> <version>1.0</version> <executions> <execution> <id>make-sonar</id> <phase>compile</phase> <goals> <goal>sonar</goal> </goals> </execution> </executions> ...
Read more

python - TypeError: can only concatenate tuple (not "float") to tuple -

-
i'm new python, question might easy, anyway, patience: as trying call newton-raphson method calculate implied volatility in black-scholes formula call/put option pricing, first thing is, newton method in scipy.optimize seems calculate function's zeros, in black-scholes formula, want function's value option price, not zero. (i'm new here programming, i'm not sure techniques.) should write function things like: def f(sigma, price): return bsformula(s0,k,r,t,q,sigma) - price then, while calling newton method, takes args=() 1 parameter in function, write this: value = newton(bsprice2, 0.5, args=price) but error message: file "bs.py", line 36, in bsimpvol value = newton(bsprice2, 0.5, args=float(price)) file "/usr/lib/python2.7/dist-packages/scipy/optimize/zeros.py", line 143, in newton q0 = func(*((p0,) + args)) typeerror: can concatenate tuple (not "float") tuple could tell me why that? how fix it? apprecia...
Read more

java - What is the difference between String. and String.this. ? -

-
this question has answer here: meaning of .this , .class in java 2 answers i'll straight point. im still learning bit of syntax , want know difference between code is code a: public class buttonz extends jbutton{ public buttonz(){ settext(new string(string.valueof(i))); } } please ignore fact i undeclared, not lost. code b: public class buttonz extends jbutton{ public buttonz(){ settext(new string(string.this.charat(i))); } } what don't yet understand difference in typing string.this , string. i under assumption when use dot operator on class accessing it's static methods(and/or variables if they're not hidden). i have studied little bit , have concluded when using string. accessing string static methods.. when using string.this. i'm accessing methods class buttonz extendi...
Read more